Metabotropic glutamate receptors: fold estimation for cysteine-rich domain
Belenikin M.S.1 , Palyulin V.A.1, Zefirov N.S.1
1. Division of Organic Chemistry, Department of Chemistry, Moscow State University
Section: Experimental/Clinical Study
Year: 2004
A fold estimation of cysteine-rich domain (CRD) of metabotropic glutamate (mGlu) receptor was made using threading methodology. For improving of prediction results calculations for all eight subtypes of mGlu were performed. This methodology modification allowed us to identify protein fold satisfying for all eight mGlu receptor subtypes. Additional shuffling tests indicate correctness obtained results. The fold variant is immunoglobulin-like β-sandwich. A number of conclusions about functional and structural role of CRD were made
Belenikin M.S. et al. Metabotropic glutamate receptors: fold estimation for cysteine-rich domain // Biomeditsinskaya Khimiya. - 2004. - V. 50. -N application 1. - P. 24-31.
Belenikin M.S. et al., "Metabotropic glutamate receptors: fold estimation for cysteine-rich domain." Biomeditsinskaya Khimiya 50.application 1 (2004): 24-31.
Belenikin, M. S., Palyulin, V. A., Zefirov, N. S. (2004). Metabotropic glutamate receptors: fold estimation for cysteine-rich domain. Biomeditsinskaya Khimiya, 50(application 1), 24-31.
References
Kunishima N., Shimada Y., Tsuji Y., Sato T., Yamamoto M., Kumasaka T., Nakanishi S., Jingami H., Morikawa K. (2000) Nature, 407(6807), 971–977. Scholar google search
Tsuchiya D., Kunishima N., Kamiya N., Jingami H., Morikawa K. (2002) Proc. Natl. Acad. Sci. U.S.A., 99(5), 2660–2665. Scholar google search
Okamoto T., Sekiyama N., Otsu M., Shimada Y., Sato A., Nakanishi S., Jingami H. (1998) J. Biol. Chem. 273, 13089–13096. Scholar google search
Jones D.T., Taylor W.R., Thornton J.M. (1992) Nature. 358(6381), 86–89. Scholar google search
Murzin A.G., Brenner S.E., Hubbard T., Chothia C. (1995) J. Mol. Biol. 247. 536-540. Scholar google search
Clark M., Cramer R.D., Van Opdenbosch N. (1989) J. Comp. Chem. 10. 982-1012. Scholar google search
White J.H., Wise A., Main M.J., Green A., Fraser N.J., Disney G.H., Barnes A.A., Emson P., Foord S.M., Marshall F.H. (1998) Nature, 396(6712), 679–682. Scholar google search
Hu J., Reyes-Cruz G., Goldsmith P.K., Spigel A.M. (2001) J. Biol. Chem. 276(10), 6901–6904. Scholar google search
Fan G.F., Ray K., Zhao X.M., Goldsmith P.K., Spiegel A.M. (1998) FEBS. 436, 353–356. Scholar google search
Hu J., Hauache O., Spiegel A.M. (2000) J. Biol. Chem. 275(21), 16382–16389. Scholar google search