To the problem of proteolytic enzyme evolution

Nemova N.N.; Bondareva L.A.

To the problem of proteolytic enzyme evolution

Nemova N.N.¹, Bondareva L.A.¹

1. Institute of Biology, Karelian Research Centre of RAS

Section: Review

PubMed Id: 18421911

Year: 2008 Volume: 54 Issue: 1 Pages: 42-57

Own and literature data on putative evolution of proteolytic enzymes have been reviewed. Modern principles of peptidase classification based on evaluation of homology of more than 66 thousand gene sequences and similarity of general structural organization of almost 2.5 thousands of known enzymes are considered. The review highlights not only evolutionary interrelationships inside related peptidase families, their possible evolutionary background, but also evolutionary determined differences in certain proteolytic pathway in organisms belonging to different taxons.

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Keywords: proteolytic enzymes, classification, molecular evolution

Citation:

Nemova, N. N., Bondareva, L. A. (2008). To the problem of proteolytic enzyme evolution. Biomeditsinskaya Khimiya, 54(1), 42-57.

This paper is also available as the English translation: 10.1134/S1990750808020017

References

Мосолов В.В. (1971) Протеолитические ферменты. Наука, М. Scholar google search
Мосолов В.В. (1988) Успехи биол. хим., 28, 125-144. Scholar google search
Антонов В.К. (1983) Химия протеолиза. Мир, М. Scholar google search
Дин Р. (1981) Процессы распада в клетке. Мир, М. Scholar google search
Bohley P. (1987) in: Hydrolytic Enzymes (A.Neuberger and K.Brocklehurst eds.) Elsevier Science Publishers B.V. (Biomedical Division), pp. 307-332. Scholar google search
Локшина Л.А. (1979) Мол. биол., 13, 1205-1229. Scholar google search
Эпель Д. (1992) Онтогенез, 23(3), 213-227. Scholar google search
Волкова Т.О., Немова Н.Н. (2005) Молекулярные механизмы апоптоза лейкозной клетки. Наука, М. Scholar google search
Бондарева Л.А., Немова Н.Н., Кяйвяряйнен Е.И. (2006) Внутриклеточная Са2+-зависимая протеолитическая система животных. Наука, М. Scholar google search
Mayer R.J., Arnold J., Laszlo L., Landon M., Lowe J. (1991) Biochim. Biophys. Acta, 1089(2), 141-157. Scholar google search
Goll D.E., Thompson V.F., Li H., Wei W., Cong J. (2003) Physiol. Rev., 83(3), 731-801. Scholar google search
Rawlings N.D., Morton F.R., Barrett A.J. (2006) Nucleic Acids Res., 34,D270-D272. Scholar google search
Rawlings N.D., O`Brien E., Barrett A.J. (2002) Nucleic Acids Res., 30(1), 343-346. Scholar google search
Richard I. (2005) J. Med. Genetics, 42, 529-539. Scholar google search
Rawlings N.D., Barrett A.J. (1993) Biochem. J., 290(1), 205-218. Scholar google search
Tang J., Wong R.N.S. (1987) J. Cell. Biochem., 33(1), 53-66. Scholar google search
Panthier J.J., Foote S., Chambraud B., Strosberg A.D., Corvol P., Rougeon F. (1982) Nature, 298(5869), 90-92. Scholar google search
Fujinaga M., Cherney M.M., Oyama H., Oda K., James M.N.G. (2004) Proc. Natl. Acad. Sci. USA, 101(10), 3364-3369. Scholar google search
Massova I., Kotra L.P., Fridman R., Mobashery S. (1998) FASEB J., 12, 1075-1095. Scholar google search
Harrison M., Abu-Elmagd M., Grocott T., Yates C., Gavrilovic J., Wheeler G.N. (2004) Dev. Dyn., 232(1), 200-214. Scholar google search
Somerville R. PT., Oblander A, Apte S.S. (2003) Gen. Biol., 4(6), 216-221. Scholar google search
Tang B.L. (2001) Int. J. Biochem. Cell. Biol., 33(1), 33-44. Scholar google search
Apte S.S. (2004) Int. J. Biochem. Cell. Biol., 36, 981-985. Scholar google search
Nicholson A.C., Malik S.B., Logsdon J.M.Jr., Van Meir E.G. (2005) BMC Evol. Biol., 5(1), 11. Scholar google search
Abrahamson M., Alvarez-Fernandez M., Nathanson C.-M. (2003) Biochem. Soc. Symp., 70, 179-199. Scholar google search
Silverman G.A., Whisstock J.C., Askew D.J., Pak S.C., Luke C.J., Cataltepe S., Irving J.A., Bird P.I. (2004) Cell. Mol. Life Sci., 61(3), 301-325. Scholar google search
Hershko A., Ciechanover A. (1998) Annu. Rev. Biochem., 67, 425-479. CrossRef Scholar google search
Lupas A., Zьhl F., Tamura T., Wolf S., Nagy I., DeMot R., Baumeister W. (1997) Mol. Biol. Reports, 24, 125-131. Scholar google search
Мухин В.А. (1998) Протеолитические ферменты в тканях некоторых морских беспозвоночных: Дисс. канд. наук. Институт биохимии им. А.Н. Баха РАН, Москва. Scholar google search
Бондарева Л.А. (2004) Влияние некоторых факторов среды на внутриклеточный протеолиз у гидробионтов. Дисc. канд. наук. КГПУ, Петрозаводск. Scholar google search
Hamazaki H. (1996) FEBS Lett., 396, 139-142. Scholar google search
Немова Н.Н. (1996) Внутриклеточные протеолитические ферменты рыб. Изд-во КарНЦ РАН, Петрозаводск. Scholar google search
Немова Н.Н., Бондарева Л.А. (2004) Протеолитические ферменты: Учебное пособие. Изд-во КарНЦ РАН, Петрозаводск. Scholar google search
Короленко Т.А., Жанаева С.Я., Потеряева О.Н., Свечникова И.Г., Фаламеева О.В., Халикова Т.А., Ярыгина Е.С., Гончарова И.А. (2004) Бюлл. СО РАМН, 2, 130-134. Scholar google search
Barrett A.J. (1977) Proteinases in mammalian cells and tissues. Amsterdam, North Holland. Scholar google search
Mort J.S., Buttle D.J. (1997) Int. J. Biochem. Cell. Biol., 29(5), 715-720. Scholar google search
Song J., Xu P., Xiang H., Su Z., Storer A.C., Ni F. (2000) FEBS Lett., 475, 157-162. Scholar google search
Chagas J.R., Di Martino M.F., Gauthier F., Lalmanach G. (1996) FEBS Lett., 392, 233-236. Scholar google search
Illy C., Quaraishi O., Wang J., Purisima E., Vernet T., Mort J.S. (1997) J. Biol. Chem., 272(2), 1197-1202. Scholar google search
Тутельян В.А., Васильев С.В. (1982) Ж. эвол. биохим. физиол., 18(2), 113-118. Scholar google search
Jйkely G., Friedrich P. (1999) J. Mol. Evol., 49(2), 272-281. Scholar google search
Suzuki K., Hata S., Kawabata Y., Sorimachi H. (2004) Diabetes, 53(1), S12-S18. Scholar google search
Strobl S., Fernandez-Catalan C., Braun M., Huber R., Masumoto H., Nakagawa K., Irie A., Sorimachi H., Bourenkow G., Bartunik H., Suzuki K., Bode W. (2000) Proc. Natl. Acad. Sci. USA, 97, 588-592. Scholar google search
Nemova N.N., Kaivarainen E.I., Bondareva L.A. (2000) Vestn. Mosk. Univ. Khimia, 41(6), 106-108. Scholar google search
Sorimachi H., Suzuki K. (2001) J. Biochem., 129, 653-664. Scholar google search
Croall D.E., Ersfeld K. (2007) Genome Biol. 8(6), 218. Scholar google search
Hata S., Nishi K., Kawamoto T., Lee H.-J., Kawahara H., Maeda T., Shintani Y., Sorimachi H., Suzuki K. (2001) J. Mol. Evol., 53, 191-203. Scholar google search
Бондарева Л.А., Немова Н.Н. (2007) Биоорг. хим. (в печати). Scholar google search
Hughes A.L. (2005) Proc. Natl. Acad. Sci. USA, 102(25), 8791-8792. Scholar google search
Parr T., Sensky P.L., Bardsley R.G., Buttery P.J. (2001) Arch. Biochem. Biophys., 395, 1-13. Scholar google search
Абрамова Е.Б., Шарова Н.П., Карпов В.Л. (2002) Мол. биол., 36(5), 761-776. Scholar google search
Шарова Н.П., Астахова Т.М., Бондарева Л.А., Дмитриева С.Б., Ерохов П.А. (2006) Биохимия, 71(9), 1278-1286. Scholar google search
Coux O., Tanaka K., Goldberg A.L. (1996) Annu. Rev. Biochem., 65, 801-847. Scholar google search
DeMartino G.N., Slaughter C.A. (1999) J. Biol. Chem., 274(32), 22123-22126. Scholar google search
Keller J.N., Hanni K.B., Markesbery W.R. (2000) Mech. Ageing Dev., 113, 61-70. Scholar google search

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