In this review summarizes data on DNA/RNA aptamers - a novel class of molecular recognition elements. Special attention is paid to the aptamers to proteins involved into pathogenesis of wide spread human diseases. These include aptamers to serine protease, to cytokines/growth factors, to influenza viral protein, nucleic acid binding proteins. Strong and specific binding for a given protein target of aptamers make them an attractive class of direct protein inhibitors. They can inhibit pathogenic proteins and it is becoming clear that aptamers have the potential to be a new and effective class of therapeutic molecules.
Download PDF:
Keywords: DNA/RNA aptamers, SELEX, proteins of blood coagulation, aptamers to cytokines/growth factors
Citation:
Spiridonova V.A. (2010) Molecular recognition elements - DNA/RNA-aptamers to proteins. Biomeditsinskaya Khimiya, 56(6), 639-656.
et al. Molecular recognition elements - DNA/RNA-aptamers to proteins // Biomeditsinskaya Khimiya. - 2010. - V. 56. -N 6. - P. 639-656.
et al., "Molecular recognition elements - DNA/RNA-aptamers to proteins." Biomeditsinskaya Khimiya 56.6 (2010): 639-656.
Spiridonova, V. A. (2010). Molecular recognition elements - DNA/RNA-aptamers to proteins. Biomeditsinskaya Khimiya, 56(6), 639-656.
Pagratis N.C., Bell C., Chang Y.F., Jennings S., Fitzwater T., Jellinek D., Dang C. (1997) Nat. Biotechnol., 15, 68-73. CrossRef Scholar google search
Green L.S., Jellinek D., Bell C., Beebe L.A., Feistner B.D., Gill S.C., Jucker F.M., Janjic N. (1995) Chem. Biol., 2, 683-695. CrossRef Scholar google search
Jellinek D., Green L.S., Bel C., Lynott C.K., Gill N., Vargeese C., Kirschenheuter G., McGee D.P., Abesinghe P., Pieken W.A. (1995) Biochemistry, 34, 11363-11372. CrossRef Scholar google search
Willis M.C., Collins B.D., Zhang T., Green L.S., Sebesta D.P., Bell C., Kellogg E., Gill S.C., Magallanez A., Knauer S., Bendele R.A., Gill P.S., Janjic N. (1998) Bioconjug. Chem., 9, 573-582. CrossRef Scholar google search
Aurup H., Siebert A., Benseler F., Williams D., Eckstein F. (1994) Nucleic Acids Res., 22, 4963-4968. CrossRef Scholar google search
Beigelman L., McSwiggen J.A., Draper K.G., Gonzalez C., Jensen K., Karpeisky A.M., Modak A.S., Matulic-Adamic J., DiRenzo A.B., Haeberli P. (1995) J. Biol. Chem., 270, 25702-25708. CrossRef Scholar google search
Tucker C.E., Chen L.S., Judkins M.B., Farmer J.A., Gill S.C., Drolet D.W. (1999) J. Chromatogr. B Biomed. Sci. Appl., 732, 203-212. CrossRef Scholar google search
White R., Rusconi C., Scardino E., Wolberg A., Lawson J., Hoffman M., Sullenger B. (2001) Mol. Ther., 4, 567-573. CrossRef Scholar google search
Rusconi C.P., Roberts J.D., Pitoc G.A., Nimjee S.M., White R.R., Quick G.Jr., Scardino E., Fay W.P., Sullenger B.A. (2004) Nat. Biotechnol., 22, 1423-1428. CrossRef Scholar google search
Panchenko E.P., Dobrovol'skij A.B. (1999) V kn. Trombozy v kardiologii. Mekhanizmy razvitiya i vozmozhnosti terapii, Izd. "Sport i kul'tura", M., p. 55-74. Scholar google search
Kumar P.K., Machida K., Urvil P.T., Kakiuchi N., Vishnuvardhan D., Shimotohno K., Taira K., Nishikawa S. (1997) Virology, 237, 270-282. CrossRef Scholar google search
Fukuda K., Vishnuvardhan D., Sekiya S., Hwang J., Kakiuchi N., Taira K., Shimotohno K., Kumar P.K., Nishikawa S. (2000) Eur. J. Biochem., 267, 3685-3694. CrossRef Scholar google search
Hwang J., Fauzi H., Fukuda K., Sekiya S., Kakiuchi N., Shimotohno K., Taira K., Kusakabe I., Nishikawa S. (2000) Biochem. Biophys. Res. Commun., 279,557-562. CrossRef Scholar google search
Smith D., Kirschenheuter G.P., Charlton J., Guidot D.M., Repine J.E. (1995) Chem. Biol., 2, 741-750. CrossRef Scholar google search
Ruckman J., Green L.S., Beeson J., Waugh S., Gillette W.L., Henninger D.D., Claesson-Welsh L., Janjic N. (1998) J. Biol. Chem., 273, 20556-20567. CrossRef Scholar google search
Gragoudas E.S., Adamis A.P., Cunningham E.T. Jr., Feinsod M., Guyer D.R. (2004) N Engl. J. Med., 351, 2805-2816. CrossRef Scholar google search
Huang J., Moore J., Soffer S., Kim E., Rowe D., Manley C.A., O`Toole K., Middlesworth W., Stolar C., Yamashiro D., Kandel J. (2001) J. Pediatr. Surg., 36, 357-361. CrossRef Scholar google search
Rojt A., Brostoff J., Meil D., In book "Immunologiya", M, "Mir", 2000, pp. 210. Scholar google search
Jellinek D., Lynott C.K., Rifkin D.B., Janjic N. (1993) Proc. Natl. Acad. Sci. USA, 90, 11227-11231. CrossRef Scholar google search
Green L.S., Jellinek D., Jenison R., Ostman A., Heldin C.H., Janjic N. (1996) Biochemistry, 35, 14413-14424. CrossRef Scholar google search
Floege J., Ostendorf T., Janssen U., Burg M., Radeke H.H., Vargeese C., Gil S.C., Green L.S., Janjic N. (1999) Am. J. Pathol., 154, 169-179. CrossRef Scholar google search
Kubik M.F., Bell C., Fitzwater T., Watson S.R., Tasset D.M (1997) J. Immunol., 159, 259-267. Scholar google search
White R.R., Shan S., Rusconi C.P., Shetty G., Dewhirst M.W., Kontos C.D., Sullenger B.A. (2003) Proc. Natl. Acad. Sci. USA, 100, 5028-5033. CrossRef Scholar google search
Bohjanen P.R., Colvin R.A., Puttaraju M., Been M.D., Garcia-Blanco M.A. (1996) Nucleic Acids Res., 24, 3733-3738. CrossRef Scholar google search
Sullenger B.A., Gallardo H.F., Ungers G.E., Gilboa E. (1991) J. Virol., 65, 6811-6816. Scholar google search
Yamamoto R., Katahira M., Nishikawa S., Baba T., Taira K., Kumar P.K. (2000) Genes Cells, 5, 371-388. CrossRef Scholar google search
Matsugami A., Tamura Y., Kudo M., Uesugi S., Yamamoto R., Kumar P., Katahira M. (2004) Nucleic Acids Symp. Ser. (Oxf), 48, 111-112. CrossRef Scholar google search
Lisziewicz J., Sun D., Smythe J., Lusso P., Lori F., Louie A., Markham P., Rossi J., Reitz M., Gallo R.C. (1993) Proc. Natl. Acad. Sci. USA, 90, 8000-8004. CrossRef Scholar google search
Browning C.M., Cagnon L., Good P.D., Rossi J., Engelke D.R., Markovitz D.M. (1999) J. Virol., 73, 5191-5195. Scholar google search
Bahner I., Kearns K., Hao Q.L., Smogorzewska E.M., Kohn D.B. (1996) J. Virol., 70, 4352-4360. Scholar google search
Kohn D.B., Bauer G., Rice C.R., Rothschild J.C., Carbonaro D.A., Valdez P., Hao Q., Zhou C., Bahner I., Kearns K., Brody K., Fox S., Haden E., Wilson K., Salata C., Dolan C., Wetter C., Aguilar-Cordova E., Church J. (1999) Blood, 94, 368-371. Scholar google search
Morishita R., Gibbons G.H., Horiuchi M., Ellison K.E., Nakama M., Zhang L., Kaneda Y., Ogihara T., Dzau V.J. (1995) Proc. Natl. Acad. Sci. USA, 92, 5855-5859. CrossRef Scholar google search
Verma I.M., Stevenson J.K., Schwarz E.M., Van Antwerp D., Miyamoto S. (1995) Genes Dev., 9, 2723-2735. CrossRef Scholar google search
Morishita R., Sugimoto T., Aoki M., Kida I., Tomita N., Moriguchi A., Maeda K., Sawa Y., Kaneda Y., Higaki J., Ogihara T. (1997) Nat. Med., 3, 894-899. CrossRef Scholar google search
Sawa Y., Morishita R., Suzuki K., Kagisaki K., Kaneda Y., Maeda K., Kadoba K., Matsuda H. (1997) Circulation, 96, 280-284. Scholar google search
Tomita N., Morishita R., Tomita S., Gibbons G.H., Zhang L., Horiuchi M., Kaneda Y., Higaki J., Ogihara T., Dzau V.J. (2000) Gene Ther., 7, 1326-1332. CrossRef Scholar google search